Mock Version: 4.1 Mock Version: 4.1 Mock Version: 4.1 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-rJava.spec'], chrootPath='/var/lib/mock/dist-oc9-epol-build-84670-57374/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=86400uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target aarch64 --nodeps /builddir/build/SPECS/R-rJava.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: aarch64 Building for target aarch64 Wrote: /builddir/build/SRPMS/R-rJava-1.0.6-1.oc9.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps --nocheck /builddir/build/SPECS/R-rJava.spec'], chrootPath='/var/lib/mock/dist-oc9-epol-build-84670-57374/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=86400uid=991gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target aarch64 --nodeps --nocheck /builddir/build/SPECS/R-rJava.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'} and shell False Building target platforms: aarch64 Building for target aarch64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.48BVSu + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf rJava + /usr/bin/mkdir -p rJava + cd rJava + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/rJava_1.0-6.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (R-rJava-configure-c99.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 Patch #0 (R-rJava-configure-c99.patch): patching file rJava/configure patching file rJava/configure.ac + rm rJava/inst/jri/JRIEngine.jar rJava/inst/jri/REngine.jar + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Efwato + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-ld -Wl,--build-id=sha1' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rJava + find rJava/jri/REngine -name Makefile -exec sed -i s/1.6/1.8/g '{}' ';' + /usr/bin/make -O -j8 V=1 VERBOSE=1 -C rJava/jri/REngine make: Entering directory '/builddir/build/BUILD/rJava/rJava/jri/REngine' javac -d . -source 1.8 -target 1.8 MutableREXP.java REXP.java REXPDouble.java REXPEnvironment.java REXPExpressionVector.java REXPFactor.java REXPGenericVector.java REXPInteger.java REXPJavaReference.java REXPLanguage.java REXPList.java REXPLogical.java REXPMismatchException.java REXPNull.java REXPRaw.java REXPReference.java REXPS4.java REXPString.java REXPSymbol.java REXPUnknown.java REXPVector.java REXPWrapper.java REngine.java REngineCallbacks.java REngineConsoleHistoryInterface.java REngineEvalException.java REngineException.java REngineInputInterface.java REngineOutputInterface.java REngineStdOutput.java REngineUIInterface.java RFactor.java RList.java package-info.java jar fc REngine.jar org rm -rf org make: Leaving directory '/builddir/build/BUILD/rJava/rJava/jri/REngine' warning: [options] bootstrap class path not set in conjunction with -source 8 REngine.java:33: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal Object o = m.invoke(null, new Object[] { args, callbacks, new Boolean(runREPL) }); ^ REXPReference.java:23: warning: [removal] Long(long) in Long has been deprecated and marked for removal this(eng, new Long(handle)); ^ Note: REXPReference.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 3 warnings make: Entering directory '/builddir/build/BUILD/rJava/rJava/jri/REngine' javac -d . -cp REngine.jar Rserve/RConnection.java Rserve/RFileInputStream.java Rserve/RFileOutputStream.java Rserve/RSession.java Rserve/RserveException.java Rserve/StartRserve.java Rserve/package-info.java Rserve/protocol/REXPFactory.java Rserve/protocol/RPacket.java Rserve/protocol/RTalk.java Rserve/protocol/jcrypt.java jar fc Rserve.jar org rm -rf org make: Leaving directory '/builddir/build/BUILD/rJava/rJava/jri/REngine' Note: Rserve/RConnection.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Rserve/protocol/REXPFactory.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. + /usr/bin/make -O -j8 V=1 VERBOSE=1 -C rJava/jri/REngine/JRI make: Entering directory '/builddir/build/BUILD/rJava/rJava/jri/REngine/JRI' rm -rf org javac -source 1.8 -target 1.8 -classpath ../REngine.jar -d . ../../Mutex.java ../../RBool.java ../../RConsoleOutputStream.java ../../REXP.java ../../RFactor.java ../../RList.java ../../RMainLoopCallbacks.java ../../RVector.java ../../Rengine.java ../../package-info.java JRIEngine.java jar fc JRIEngine.jar org make: Leaving directory '/builddir/build/BUILD/rJava/rJava/jri/REngine/JRI' warning: [options] bootstrap class path not set in conjunction with -source 8 ../../RFactor.java:42: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal id.addElement(new Integer(i[j]-base)); ^ ../../RFactor.java:56: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal id.addElement(new Integer(i)); ^ JRIEngine.java:165: warning: [removal] Long(long) in Long has been deprecated and marked for removal globalEnv = new REXPReference(this, new Long(rni.rniSpecialObject(Rengine.SO_GlobalEnv))); ^ JRIEngine.java:166: warning: [removal] Long(long) in Long has been deprecated and marked for removal nullValueRef = new REXPReference(this, new Long(R_NilValue = rni.rniSpecialObject(Rengine.SO_NilValue))); ^ JRIEngine.java:167: warning: [removal] Long(long) in Long has been deprecated and marked for removal emptyEnv = new REXPReference(this, new Long(rni.rniSpecialObject(Rengine.SO_EmptyEnv))); ^ JRIEngine.java:168: warning: [removal] Long(long) in Long has been deprecated and marked for removal baseEnv = new REXPReference(this, new Long(rni.rniSpecialObject(Rengine.SO_BaseEnv))); ^ JRIEngine.java:202: warning: [removal] Long(long) in Long has been deprecated and marked for removal globalEnv = new REXPReference(this, new Long(rni.rniSpecialObject(Rengine.SO_GlobalEnv))); ^ JRIEngine.java:203: warning: [removal] Long(long) in Long has been deprecated and marked for removal nullValueRef = new REXPReference(this, new Long(R_NilValue = rni.rniSpecialObject(Rengine.SO_NilValue))); ^ JRIEngine.java:204: warning: [removal] Long(long) in Long has been deprecated and marked for removal emptyEnv = new REXPReference(this, new Long(rni.rniSpecialObject(Rengine.SO_EmptyEnv))); ^ JRIEngine.java:205: warning: [removal] Long(long) in Long has been deprecated and marked for removal baseEnv = new REXPReference(this, new Long(rni.rniSpecialObject(Rengine.SO_BaseEnv))); ^ JRIEngine.java:230: warning: [removal] Long(long) in Long has been deprecated and marked for removal globalEnv = new REXPReference(this, new Long(rni.rniSpecialObject(Rengine.SO_GlobalEnv))); ^ JRIEngine.java:231: warning: [removal] Long(long) in Long has been deprecated and marked for removal nullValueRef = new REXPReference(this, new Long(R_NilValue = rni.rniSpecialObject(Rengine.SO_NilValue))); ^ JRIEngine.java:232: warning: [removal] Long(long) in Long has been deprecated and marked for removal emptyEnv = new REXPReference(this, new Long(rni.rniSpecialObject(Rengine.SO_EmptyEnv))); ^ JRIEngine.java:233: warning: [removal] Long(long) in Long has been deprecated and marked for removal baseEnv = new REXPReference(this, new Long(rni.rniSpecialObject(Rengine.SO_BaseEnv))); ^ JRIEngine.java:252: warning: [removal] Long(long) in Long has been deprecated and marked for removal ref = new REXPReference(this, new Long(pr)); ^ JRIEngine.java:285: warning: [removal] Long(long) in Long has been deprecated and marked for removal ref = new REXPReference(this, new Long(pr)); ^ JRIEngine.java:333: warning: [removal] Long(long) in Long has been deprecated and marked for removal ref = new REXPReference(this, new Long(pr)); ^ JRIEngine.java:513: warning: [removal] Long(long) in Long has been deprecated and marked for removal return new REXPReference(this, new Long(ptr)); ^ JRIEngine.java:686: warning: [removal] Long(long) in Long has been deprecated and marked for removal ref = new REXPReference(this, new Long(pr)); ^ JRIEngine.java:713: warning: [removal] Long(long) in Long has been deprecated and marked for removal ref = new REXPReference(this, new Long(p)); ^ JRIEngine.java:777: warning: [removal] Long(long) in Long has been deprecated and marked for removal ref = new REXPReference( this, new Long(p) ) ; ^ Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 22 warnings + mv rJava/jri/REngine/REngine.jar rJava/jri/REngine/JRI/JRIEngine.jar rJava/inst/jri/ Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.L9LXCM + RPM_EC=0 ++ jobs -p + exit 0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64 ++ dirname /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64 + cd rJava + mkdir -p /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64/usr/lib64/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64/usr/lib64/R/library rJava * installing *source* package 'rJava' ... files 'configure', 'configure.ac', 'inst/jri/JRIEngine.jar', 'inst/jri/REngine.jar', 'jri/REngine/JRI/Makefile', 'jri/REngine/JRI/test/Makefile', 'jri/REngine/Makefile', 'jri/REngine/Rserve/Makefile', 'jri/REngine/Rserve/test/Makefile' have the wrong MD5 checksums ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether gcc supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/bin/java' archiver : '/usr/bin/jar' compiler : '/usr/bin/javac' header prep.: '' cpp flags : '-I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux' java libs : '-L/usr/lib/jvm/jre/lib/server -ljvm' checking whether Java run-time works... yes checking whether -Xrs is supported... yes checking whether -Xrs will be used... yes checking whether JVM will be loaded dynamically... no checking whether JNI programs can be compiled... yes checking whether JNI programs run... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... yes checking whether debugging output should be enabled... no checking whether memory profiling is desired... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether headless init is enabled... no checking whether JRI is requested... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h === configuring in jri (/builddir/build/BUILD/rJava/rJava/jri) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' 'CC=gcc' 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-ld -Wl,--build-id=sha1' 'CPPFLAGS=-I/usr/local/include' --cache-file=/dev/null --srcdir=. checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for sys/types.h... (cached) yes checking for sys/select.h... yes checking Java version... 17.0.11-ga checking Java compatibility version (integer)... 17 checking whether actually works... no checking whether javah was replaced by javac -h... yes checking for target flags... -h . -target 1.8 -source 1.8 checking whether Java interpreter works... checking whether JNI programs can be compiled... yes checking whether JNI programs can be run... yes checking JNI data types... ok checking whether Rinterface.h exports R_CStackXXX variables... yes checking whether Rinterface.h exports R_SignalHandlers... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs using C compiler: 'gcc (Tencent Compiler 12.3.1.1) 12.3.1 20230912 (OpenCloudOS 12.3.1.1-1)' gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c Rglue.c -o Rglue.o Rglue.c:1051:13: warning: 'new_jrectRef' defined but not used [-Wunused-function] 1051 | static SEXP new_jrectRef(JNIEnv *env, jobject a, const char *sig, SEXP dim ) { | ^~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c arrayc.c -o arrayc.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c callJNI.c -o callJNI.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c callback.c -o callback.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c fields.c -o fields.o fields.c: In function 'inputToClass': fields.c:91:13: warning: unused variable 'c' [-Wunused-variable] 91 | char *c = clnam; | ^ fields.c: In function 'RgetField': fields.c:149:9: warning: unused variable 'clnam' [-Wunused-variable] 149 | char *clnam = 0, *detsig = 0; | ^~~~~ gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c init.c -o init.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c jri_glue.c -o jri_glue.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c loader.c -o loader.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c otables.c -o otables.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c rJava.c -o rJava.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c registration.c -o registration.o gcc -I"/usr/include/R" -DNDEBUG -I. -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/local/include -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -c tools.c -o tools.o gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-ld -Wl,--build-id=sha1 -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o registration.o tools.o -L/usr/lib/jvm/jre/lib/server -ljvm -L/usr/lib64/R/lib -lR (cd ../jri && make) make[1]: Entering directory '/builddir/build/BUILD/rJava/rJava/jri' make -C src JRI.jar make[2]: Entering directory '/builddir/build/BUILD/rJava/rJava/jri/src' /usr/bin/javac -h . -target 1.8 -source 1.8 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java warning: [options] bootstrap class path not set in conjunction with -source 8 ../RFactor.java:42: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal id.addElement(new Integer(i[j]-base)); ^ ../RFactor.java:56: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal id.addElement(new Integer(i)); ^ Note: ../REXP.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 3 warnings if [ -n "" ]; then -d . -classpath . org.rosuda.JRI.Rengine; fi gcc -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -fPIC -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/include/R -I/usr/include/R gcc -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -fPIC -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/include/R -I/usr/include/R gcc -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -fPIC -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -I/usr/include/R -I/usr/include/R gcc -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -fPIC -I/usr/include/R -I/usr/include/R gcc -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -fPIC -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux gcc -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -DHAVE_CONFIG_H -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-cc1 -fstack-protector-strong -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux -fPIC -I/usr/lib/jvm/jre/include -I/usr/lib/jvm/jre/include/linux gcc -o libjri.so Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-ld -Wl,--build-id=sha1 -shared -L/usr/lib/jvm/jre/lib/server -ljvm -Wl,--export-dynamic -fopenmp -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/OpenCloudOS/OpenCloudOS-hardened-ld -Wl,--build-id=sha1 -L/usr/lib64/R/lib -lR -lpcre2-8 -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n /usr/bin/javac -h . -target 1.8 -source 1.8 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java warning: [options] bootstrap class path not set in conjunction with -source 8 ../RFactor.java:42: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal id.addElement(new Integer(i[j]-base)); ^ ../RFactor.java:56: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal id.addElement(new Integer(i)); ^ Note: ../REXP.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 3 warnings /usr/bin/jar fc JRI.jar org libjri.so make[2]: Leaving directory '/builddir/build/BUILD/rJava/rJava/jri/src' rm -f libjri.so cp src/libjri.so libjri.so /usr/bin/javac -h . -target 1.8 -source 1.8 -classpath src/JRI.jar -d examples examples/rtest.java warning: [options] bootstrap class path not set in conjunction with -source 8 Note: examples/rtest.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 1 warning /usr/bin/javac -h . -target 1.8 -source 1.8 -classpath src/JRI.jar -d examples examples/rtest2.java warning: [options] bootstrap class path not set in conjunction with -source 8 Note: examples/rtest2.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 1 warning make[1]: Leaving directory '/builddir/build/BUILD/rJava/rJava/jri' installing via 'install.libs.R' to /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64/usr/lib64/R/library/00LOCK-rJava/00new/rJava ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices Warning in file.copy(file.path(R.home("doc"), "html", "R.css"), outman) : problem copying /usr/share/doc/R/html/R.css to /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64/usr/lib64/R/library/00LOCK-rJava/00new/rJava/html/R.css: No such file or directory ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rJava) + test -d rJava/src + cd rJava/src + rm -f Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o registration.o tools.o rJava.so + rm -f /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64/usr/lib64/R/library/R.css + mkdir -p /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64/usr/share/javadoc + mv /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64/usr/lib64/R/library/rJava/javadoc /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64/usr/share/javadoc/R-rJava + ln -s /usr/share/javadoc/R-rJava /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64/usr/lib64/R/library/rJava/javadoc + /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 1.0.6-1.oc9 --unique-debug-suffix -1.0.6-1.oc9.aarch64 --unique-debug-src-base R-rJava-1.0.6-1.oc9.aarch64 -S debugsourcefiles.list /builddir/build/BUILD/rJava extracting debug info from /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64/usr/lib64/R/library/rJava/jri/libjri.so extracting debug info from /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64/usr/lib64/R/library/rJava/libs/rJava.so 371 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/OpenCloudOS/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/OpenCloudOS/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/OpenCloudOS/brp-mangle-shebangs mangling shebang in /usr/lib64/R/library/rJava/jri/run from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/OpenCloudOS/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/OpenCloudOS/brp-python-hardlink Processing files: R-rJava-1.0.6-1.oc9.aarch64 warning: absolute symlink: /usr/lib64/R/library/rJava/javadoc -> /usr/share/javadoc/R-rJava Provides: R-rJava = 1.0.6-1.oc9 R-rJava(aarch-64) = 1.0.6-1.oc9 libjri.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libjvm.so()(64bit) libjvm.so(SUNWprivate_1.1)(64bit) rtld(GNU_HASH) Recommends: R-rJava-javadoc = 1.0.6-1.oc9 Processing files: R-rJava-javadoc-1.0.6-1.oc9.noarch Provides: R-rJava-javadoc = 1.0.6-1.oc9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-rJava-debugsource-1.0.6-1.oc9.aarch64 Provides: R-rJava-debugsource = 1.0.6-1.oc9 R-rJava-debugsource(aarch-64) = 1.0.6-1.oc9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-rJava-debuginfo-1.0.6-1.oc9.aarch64 Provides: R-rJava-debuginfo = 1.0.6-1.oc9 R-rJava-debuginfo(aarch-64) = 1.0.6-1.oc9 debuginfo(build-id) = 0ce4029960c97bd7d4269795813846214b1f799d debuginfo(build-id) = e2cf68e79432333ff1d9c6a9aa7b2a9f3e00b17b libjri.so-1.0.6-1.oc9.aarch64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-rJava-debugsource(aarch-64) = 1.0.6-1.oc9 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-rJava-1.0.6-1.oc9.aarch64 Wrote: /builddir/build/RPMS/R-rJava-debugsource-1.0.6-1.oc9.aarch64.rpm Wrote: /builddir/build/RPMS/R-rJava-debuginfo-1.0.6-1.oc9.aarch64.rpm Wrote: /builddir/build/RPMS/R-rJava-javadoc-1.0.6-1.oc9.noarch.rpm Wrote: /builddir/build/RPMS/R-rJava-1.0.6-1.oc9.aarch64.rpm RPM build warnings: absolute symlink: /usr/lib64/R/library/rJava/javadoc -> /usr/share/javadoc/R-rJava Child return code was: 0